Current Projects


Mechanisms of Collagenolysis

Collagen Modulation of the Tumor Microenvironment

Formation of Endothelialization by Peptide-Amphiphile Coated Surfaces   

Expression Profiling of Peptide Amphiphile Induced Melanoma Cells

Synthesis of Unusual Fmoc Amino Acids

Biophysical Characterization Peptide-Amphiphile Minin-Proteins

                                                                  

                                Physical Sciences Building                                                       The view from our Lab 

 


Mechanisms of Collagenolysis

The triple-helical conformation of collagen (see Figure 1) has long been recognized for its role in structural stabilization of connective tissue. The dissolution of the collagen triple-helix has thus been implicated in a variety of diseases that effect the structural integrity of various components of the body. 

 

Figure 1:  The triple-helical peptide-amphiphile construct

 

Collagen also provides a barrier to “compartmentalize”  cellular activities; destruction of this barrier plays a role in tumor cell invasion and metastasis. The matrix metalloproteinase (MMP) family has been recognized for their collagenolytic activities, and has thus been the subject of intense research efforts, in order to elucidate their mechanisms of action and allow for rational design of inhibitors. We have previously developed novel methodology for constructing triple-helical peptides (THPs) and have applied these synthetic proteins for the study of enzyme interactions with collagens. In the course of our early studies, we have discovered that “triple-helical peptidase” activity may be more widespread amongst proteases than previously believed. It appears that the unique aspect of collagenolytic activity may not be the ability to cleave a triple-helix, but rather the ability to bind and orient the native collagen molecule properly. This paradigm shift could have significant effects on the design of inhibitors against collagenolytic activity. To further explore the nature of triple-helical peptidase activity, a series of THP substrates will be assembled, incorporating known sites of collagen hydrolysis and varying over a range of Tm values. Substrate thermal stability will be correlated to enzyme activity. In tandem, 2D NMR experiments using 15N-labeled amino acids will examine the mobilities of the peptide backbone in these substrates. Individual kinetic parameters and activation energies will be evaluated for MMP, trypsin, thermolysin, cathepsin K, and aggrecanase hydrolysis of THPs. MMP-1, MMP-2, MMP-8, and cathepsin K mutants will be utilized to determine the regions within these enzymes critical for triple-helical peptidase activity. Finally, selective substrates will be designed and improved methods for the synthesis of THP substrates will be developed. Overall, triple-helical peptidase activity will be systematically evaluated for a variety of proteases as a function of substrate sequence and conformational flexibility, and the mechanism of collagenolytic activity will better understood.

 


Collagen Modulation of the Tumor Microenvironment 

Investigation of collagen structural modulation of melanoma cellular behaviors. We have shown that melanoma cell adhesion, spreading, and motility is promoted by the a1(IV)531-543 region of type IV collagen. We will compare the promotion of cell adhesion, spreading, and motility by triple-helical (homo- and heterotrimeric) and linear versions of the ligand. We will synthesize single-stranded and triple-helical peptides with Lys substituted by Hyl and glycosylated (Od) Hyl for Lys543 and Lys540 from the human a1(IV)531-543 gene sequence. Protein sequence analysis has indicated that both of these sites are Hyl in the native protein and that at least one is glycosylated. Both mono- and disaccharides will be incorporated, as is found in native collagen.

 

Investigation of collagen structural modulation of signal transduction pathways. We have shown a correlation between melanoma cell binding to a1(IV)531-543 via the a3b1 integrin and induction of p125FAK and paxillin phosphorylation. We will compare cell binding to triple-helical (homo- and heterotrimeric) and linear (glycosylated and non-glycosylated) versions of the ligand, examine time courses of induction, levels of induction, and look at the effects of clustered versus non-clustered ligand. We will expand our initial signaling studies to look at downstream events, i.e. which pathways are effected past pp125FAK, such as Tyr phosphorylation and binding of paxillin or Grb2. We will use immunoprecipitation analysis to detect paxillin and Grb2, and "peptide insertion" technology to inhibit potential SH2 domain binding of Grb2 or pp60src to pp125FAK intracellularly. We will also use an all-D peptide variant of a1(IV)531-543 and determine if the same signal transduction pathways are induced as for the all-L peptide. We have shown that virtually identical levels of binding of the a3b1 integrin to the a1(IV)531-543 sequence are achieved regardless of ligand stereochemistry. For therapeutic purposes, the all-D peptide represents a potential in vivo inhibitor of metastasis, as it is resistant to proteolysis.

 

Investigation of collagen structural modulation of cellular production of basement membrane degrading metalloproteinases. We have shown a correlation between cell binding to a1(IV)531-543 via the melanoma cell a3b1 integrin and induction of certain metalloproteinases. We will compare binding to triple-helical and linear versions of the ligand, examine time courses of induction, and look at clustered versus non-clustered ligand. The enzyme products to be studied are several members of the matrix metalloproteinase (MMP) family as well as a novel ~50 kDa metalloenzyme that we have discovered. Metalloproteinases will be characterized via gel zymography and assaying with fluorogenic and type IV collagen substrates. The novel metalloenzyme will be further purified and characterized.

 


Formation of Endothelialization by Peptide-Amphiphile Coated Surfaces   

Introduction

Numerous methods have been described for improving biomaterial biocompatibility. Our approach involves coating biomaterial surfaces with cell active ligands that maintain clearly defined structures at physiological temperatures. "Peptide-amphiphiles," whereby hydrocarbon chains are covalently linked to peptide sequences, have been shown previously to (a) form a-helical (see Figure 2) or triple-helical (see Figure 1) molecular architectures and (b) induce melanoma cell adhesion and spreading. In the present study, a series of peptide-amphiphiles incorporating cell adhesion sites from type I collagen were screened for endothelial cell adhesion. These adhesion promoting molecules were then mixed with the endothelial cell proliferating region of SPARC (Secreted Protein Acidic and Rich in Cysteine). The greatest adhesion and spreading activity was achieved by using a mixture of two peptide-amphiphiles and decanoic acid (C10). Decanoic acid was required for proper packing of the peptide-amphiphiles to allow for optimal cellular interactions. This mixture will now be deposited onto the surface of a biomaterial, cardiovascular stents. These stents will then be tested in a porcine angioplasty/restenosis model.

 

Figure 2:  The a-helical peptide-amphiphile construct

 

Samples used for preliminary studies

 

 

Future Studies

 


Expression Profiling of Peptide Amphiphile Induced Melanoma Cells

In recent years, the United States has seen an alarming 1 in 4 deaths resulting from cancer-related illnesses, accounting for the deaths of more then half a million Americans per year (1) . Mortality from cancer is frequently due to metastasis, given that surgical excision of the primary tumor considerably enhances a patient’s prognosis and prolongs survival (2) . The metastatic process is a complex series of events involving 1) primary tumor intravasation (migration into the circulatory system), 2) traveling through the blood stream to a secondary site where 3) adhesion and migration on the extracellular matrix (ECM) components occurs, leading to 4) tumor cell activation and 5) invasion of the basement membrane to ultimately result in the 6) establishment of a secondary site of tumor growth.  It is the goal of our laboratory to further elucidate the processes that lead to tumor metastasis, concentrating on the interactions between the tumor cell and specific components of the ECM, as well as the differential response of the tumor cells to these elements.  

 

Tumor cells interact with basement membrane collagen (type IV) at the site of extravasation through distinct cellular receptors, including the a1b1, a2b1,  and a3b1 integrins, and cell surface proteoglycans, such as CD44.  These receptors are well characterized as being differentially expressed in metastatic tumors, relative to the normal cells, depending on tumor type and stage of progression (3) . Immediately following integrin-ligand binding, activation of the tumor cell occurs which modulates a tyrosine-kinase signaling cascade within the tumor cell.  Down-stream, induction of the mitogen-activated protein kinase (MAPK) pathway occurs, resulting in the expression of specific ‘factors’ that facilitate the invasion of the secondary tissues.  Among these factors are proteolytic enzymes, such as the matrix metalloproteinases (MMPs), which are responsible (here) for compromising the basement membrane, as well as the production of specific cytokines that recruit the endothelium into the extravasation sequence. The objectives for this project focus on further elucidating this tumor-cell receptor/collagen interaction and the subsequent biochemical consequences, and are as follows:

 

Objective 1.  Preparation and characterization of peptide ligands specific to CD44 and a2b1 integrins. Using solid-phase methodology, we will prepare the following peptides sequences derived from type IV collagen, in both single stranded and triple helical forms: the CD44 specific IV-H1 (a1(IV)1263-1277), in both glycosylated and non-glycosylated forms, and the recently solved a2b1 integrin specific sequence (a1(IV)405-410).  We shall verify peptide integrity by Edman-degradation sequence analysis, amino acid analysis, and MALDI-TOF mass spectrometry, followed by circular dichoism and 2D NMR studies to demonstrate triple helicity.  

 

Objective 2.  Examination of the specific signaling-cascades induced by melanoma cell receptor-ligand binding.  The binding of melanoma cell integrins to the basement membrane collagen (type IV) is known to induce a tyrosine-kinase signaling cascade, resulting in the phosphorylation of a 125 kDa focal adhesion kinase (p125FAK), as well as the down-stream activation of the MAPK pathway.  Through western blot analysis we will reveal a time course and relative induction levels for the known signaling components, in highly metastatic melanoma cells stimulated with the peptides prepared in Objective 1.  Furthermore, signaling studies will also be performed with melanocytes and poorly metastatic melanoma cell lines in an effort to create an ‘induction profile’ for the various stages of tumor progression.

 

Objective 3. Identification of the specific protease, TIMP, and cytokine response by the melanoma cells to ligand binding. Previously, we investigated tumor cell induction with the Hep III sequence of type IV collagen (a1(IV)531-543) and documented production of MMPs 1, 2 and 9, as well as a novel 50 kDa species, which may be a member of the ADAM family of proteases. Along these lines, we shall examine post-induction media from highly metastatic melanoma cells stimulated with the peptides from Specific Aim 1 for cytokines, tissue inhibitors of metalloproteinases (TIMPs), MMPs, and members of the ADAM/ADAM-TS family of proteases. We will use substrate zymography and western blot techniques, as before, but also introduce the techniques of quantitative RT-PCR and gene micro-array technology to reveal modulation of selected gene products. These studies will be reiterated on melanocytes and poorly metastatic melanoma cell lines in an attempt to evaluate the differential expression of these gene products at various stages of tumor progression. 
 


Synthesis of Unusual Fmoc Amino Acids

Synthesis of Glycosylated hydroxylysine derivatives

Hydroxylysine (Hyl) is the major glycosylation site within collagens. The d-hydroxyl group may be posttranslationally modified by the monosaccharide galactose (b-D-galactopyranosyl) or the disaccharide glucose-galactose [a-D-glucopyranosyl-(1®2)-b-D-galactopyranosyl]. Interest in collagen glycosylation stems from the recent reports of T-cell recognition of a glycosylated sequence within type II collagen, the identification of melanoma and breast carcinoma binding sites within type IV collagen that contain glycosylated Hyl residues, and the activation of specific tyrosine receptor kinases by glycosylated type I collagen. We have developed a strategy that allows for coupling of a properly protected monosaccharide or disaccharide  derivative to an amino acid that contains protected carboxyl and amino groups and a free hydroxyl group.

 

A Fmoc-glycosylated L-hydroxylysine {Fmoc-L-Hyl(e-Boc,O-2,3,4,6-tetra-O-acetyl-b-D-galactopyranosyl)} [see Diagram 1] was prepared in our Lab. This derivative was then used to prepare a model glycopeptide from tumor cell recognition site within type IV collagen and was recently being examined to see the effect of ligand glycosyaltion on tumor cell signaling to study the mechanism tumor cell interaction with or invasion of basement membrane.

 

Diagram 1: Fmoc-glycosylated L-hydroxylysine

 

Currently we are making an attempt to prepare Fmoc-Hyl[(e-Boc, O-d-(2-O-a-D-glucopyranosyl)-b-D-galactopyranosyl] using a similar approach used for the preparation of monoglycosylated hydroxylysine.

 


Biophysical Characterization of Peptide-Amphiphile Mini-Proteins

 

2D NMR Analysis of Type II Collagen Substrate/Enzyme Dynamics

To examine the site-specific conformational dynamics of collagen in response to matrix metalloproteinase cleavage using multidimensional NMR techniques, including relaxation studies utilizing appropriately 15N-labeled collagen mimics. This research is initially focused on human collagen type II (769-783 region) and the specific collagenolytic (vs. triple helicase) properties of MMP-1. The results are anticipated to facilitate the drug design of specific MMP inhibitors with therapeutic applications in such pathologies as osteoarthritis and cardiovascular diseases.